Goyal S, Perkins NC, Meiners J-C. Resolving the sequence-dependent stiffness of DNA using cyclization experiments and a computational rod model. Journal of Computational and Nonlinear Dynamics. 2008;3(1).
Publications
2008
Lee CL, Goyal S, Perkins NC. Non-linear Dynamic Intertwining of Rods With Self-Contact. 2008.
Goyal S, Perkins N, Lee CL. Non-linear dynamic intertwining of rods with self-contact. International Journal of Non-Linear Mechanics. 2008;43(1):65–73.
Palanthandalam-Madapusi HJ, Goyal S. Estimation of nonlinear sequence-dependent constitutive law for DNA molecules. In: Decision and Control, 2008. CDC 2008. 47th IEEE Conference on. IEEE; 2008. pp. 2674–2679.
Lillian TD, Goyal S, Meyhöfer E, Kahn JD, Perkins NC. Computational elastic rod theory captures DNA and protein flexibility in the Lac-repressor complex. topology. 2008;6(5):7.
Goyal S, Perkins N. Looping mechanics of rods and DNA with non-homogeneous and discontinuous stiffness. International Journal of Non-Linear Mechanics. 2008;43(10):1121–1129.
Lillian TD, Goyal S, Kahn JD, Meyhöfer E, Perkins N. Computational analysis of looping of a large family of highly bent DNA by LacI. Biophysical journal. 2008;95(12):5832–5842.
2007
Goyal S, Perkins NC, Lee CL. Writhing dynamics of cables with self-contact. arXiv preprint physics/0702198. 2007.
Wilson DP, Lillian T, Goyal S, Tkachenko A V, Perkins NC, Meiners J-C. Understanding the role of thermal fluctuations in DNA looping. In: Noise and Fluctuations in Biological, Biophysical, and Biomedical Systems. Vols. 6602. International Society for Optics and Photonics; 2007. p. 660208.
Goyal S, Perkins NC. Structural Modeling of DNA Loops in Lactose-Repressor. Arxiv preprint physics/0702200. 2007.